J3_6CZR_034

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

6CZR|1|2A|A|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CZR_034 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1098

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6CZR|1|2A|G|1389
6CZR|1|2A|C|1390
6CZR|1|2A|G|1391
6CZR|1|2A|G|1392
6CZR|1|2A|G|1393
6CZR|1|2A|A|1394
6CZR|1|2A|C|1395
*
6CZR|1|2A|G|1426
6CZR|1|2A|G|1427
6CZR|1|2A|C|1428
6CZR|1|2A|A|1429
6CZR|1|2A|G|1430
*
6CZR|1|2A|C|1447
6CZR|1|2A|C|1448

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23