J3_6CZR_076

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CZR_076 not in the Motif Atlas

Homologous match to J3_9DFE_009

Geometric discrepancy: 0.1826

The information below is about J3_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CZR|1|1A|G|1100
6CZR|1|1A|G|1101
6CZR|1|1A|A|1102
*
6CZR|1|1A|U|1126
6CZR|1|1A|U|1127
6CZR|1|1A|U|1128
6CZR|1|1A|A|1129
6CZR|1|1A|A|1130
6CZR|1|1A|A|1131
6CZR|1|1A|G|1132
*
6CZR|1|1A|C|1147
6CZR|1|1A|A|1148
6CZR|1|1A|C|1149

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36