J3_6CZR_080

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6CZR|1|2A|G|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CZR_080 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.1176

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6CZR|1|2A|C|320
6CZR|1|2A|G|321
6CZR|1|2A|A|322
6CZR|1|2A|A|323
6CZR|1|2A|G|324
*
6CZR|1|2A|C|339
6CZR|1|2A|G|340
6CZR|1|2A|C|341
6CZR|1|2A|C|342
6CZR|1|2A|A|343
6CZR|1|2A|G|344
6CZR|1|2A|A|345
6CZR|1|2A|G|346
6CZR|1|2A|A|347
6CZR|1|2A|G|348
*
6CZR|1|2A|C|360
6CZR|1|2A|G|361
6CZR|1|2A|U|362
6CZR|1|2A|A|363
6CZR|1|2A|G|364

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24