J3_6CZR_085

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6CZR|1|2a|C|49, 6CZR|1|2a|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CZR_085 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1142

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6CZR|1|2a|G|47
6CZR|1|2a|C|48
6CZR|1|2a|C|49
6CZR|1|2a|U|50
6CZR|1|2a|A|51
6CZR|1|2a|A|52
6CZR|1|2a|G|53
*
6CZR|1|2a|U|355
6CZR|1|2a|A|356
6CZR|1|2a|G|357
6CZR|1|2a|G|358
6CZR|1|2a|A|359
6CZR|1|2a|A|360
6CZR|1|2a|U|361
6CZR|1|2a|C|362
6CZR|1|2a|U|363
*
6CZR|1|2a|A|389
6CZR|1|2a|G|390
6CZR|1|2a|C|391

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16