J3_6D90_014

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

6D90|1|5|C|1237, 6D90|1|5|C|1249, 6D90|1|5|C|1252, 6D90|1|5|G|1271, 6D90|1|5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|U|982
6D90|1|5|C|983
6D90|1|5|C|984
*
6D90|1|5|G|1070
6D90|1|5|C|1071
6D90|1|5|C|1072
6D90|1|5|G|1073
6D90|1|5|G|1074
*
6D90|1|5|C|1236
6D90|1|5|C|1237
6D90|1|5|A|1238
6D90|1|5|C|1239
6D90|1|5|G|1244
6D90|1|5|C|1245
6D90|1|5|G|1246
6D90|1|5|U|1247
6D90|1|5|C|1248
6D90|1|5|C|1249
6D90|1|5|C|1250
6D90|1|5|C|1251
6D90|1|5|C|1252
6D90|1|5|G|1271
6D90|1|5|C|1272
6D90|1|5|G|1273

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain E

eL6

Chain F

uL30

Chain b

eL29