J3_6D90_023
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGG*CUGACC*GGGACAG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6D90_023 not in the Motif Atlas
- Geometric match to J3_4WF9_007
- Geometric discrepancy: 0.2729
- The information below is about J3_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07703.1
- Basepair signature
- cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6D90|1|5|C|3937
6D90|1|5|G|3938
6D90|1|5|G|3939
*
6D90|1|5|C|4074
6D90|1|5|U|4075
6D90|1|5|G|4076
6D90|1|5|A|4077
6D90|1|5|C|4078
6D90|1|5|C|4079
*
6D90|1|5|G|4167
6D90|1|5|G|4168
6D90|1|5|G|4169
6D90|1|5|A|4170
6D90|1|5|C|4171
6D90|1|5|A|4172
6D90|1|5|G|4173
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain N
- eL15
Coloring options: