J3_6D90_026

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUUCG*CCUGCUUCU*AAGG

Length

19 nucleotides

Bulged bases

6D90|1|5|U|4989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|C|4970
6D90|1|5|A|4971
6D90|1|5|U|4972
6D90|1|5|U|4973
6D90|1|5|C|4974
6D90|1|5|G|4975
*
6D90|1|5|C|4983
6D90|1|5|C|4984
6D90|1|5|U|4985
6D90|1|5|G|4986
6D90|1|5|C|4987
6D90|1|5|U|4988
6D90|1|5|U|4989
6D90|1|5|C|4990
6D90|1|5|U|4991
*
6D90|1|5|A|5060
6D90|1|5|A|5061
6D90|1|5|G|5062
6D90|1|5|G|5063

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31