J3_6D90_031

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCACCC*GGGGCUG

Length

29 nucleotides

Bulged bases

6D90|1|2|G|1256, 6D90|1|2|A|1258, 6D90|1|2|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|C|1237
6D90|1|2|U|1238
6D90|1|2|U|1239
6D90|1|2|A|1240
6D90|1|2|A|1241
6D90|1|2|U|1242
6D90|1|2|U|1243
6D90|1|2|U|1244
*
6D90|1|2|G|1255
6D90|1|2|G|1256
6D90|1|2|G|1257
6D90|1|2|A|1258
6D90|1|2|A|1259
6D90|1|2|A|1260
6D90|1|2|C|1261
6D90|1|2|C|1262
6D90|1|2|U|1263
6D90|1|2|C|1264
6D90|1|2|A|1265
6D90|1|2|C|1266
6D90|1|2|C|1267
6D90|1|2|C|1268
*
6D90|1|2|G|1514
6D90|1|2|G|1515
6D90|1|2|G|1516
6D90|1|2|G|1517
6D90|1|2|C|1518
6D90|1|2|U|1519
6D90|1|2|G|1520

Current chains

Chain 2

18S rRNA

Nearby chains

Chain QQ

uS19

Chain TT

uS13

Chain VV

uS10

Chain ee

eS29

Chain gg

eS31

Chain jj

eRF1