J3_6D90_035

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

6D90|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|C|1391
6D90|1|2|U|1392
6D90|1|2|G|1393
6D90|1|2|G|1394
6D90|1|2|C|1395
*
6D90|1|2|G|1450
6D90|1|2|G|1451
6D90|1|2|A|1452
6D90|1|2|C|1453
6D90|1|2|A|1454
6D90|1|2|A|1455
6D90|1|2|G|1456
*
6D90|1|2|C|1470
6D90|1|2|C|1471
6D90|1|2|C|1472
6D90|1|2|G|1473
6D90|1|2|A|1474
6D90|1|2|G|1475
6D90|1|2|A|1476
6D90|1|2|U|1477
6D90|1|2|U|1478
6D90|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain EE

uS3

Chain GG

uS7

Chain RR

uS9

Chain SS

eS17

Chain VV

uS10

Chain dd

eS28

Chain ee

eS29

Chain hh

RACK1