J3_6D90_039

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUU*AGAAGC*GCGUGGAA

Length

17 nucleotides

Bulged bases

6D90|1|5|A|1805, 6D90|1|5|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|U|1725
6D90|1|5|U|1726
6D90|1|5|U|1727
*
6D90|1|5|A|1802
6D90|1|5|G|1803
6D90|1|5|A|1804
6D90|1|5|A|1805
6D90|1|5|G|1806
6D90|1|5|C|1807
*
6D90|1|5|G|1831
6D90|1|5|C|1832
6D90|1|5|G|1833
6D90|1|5|U|1834
6D90|1|5|G|1835
6D90|1|5|G|1836
6D90|1|5|A|1837
6D90|1|5|A|1838

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

uL30

Chain T

eL21

Chain b

eL29