J3_6D90_044
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGUUG*CCUUCG*CGCACCGCACGUUCGUG
- Length
- 29 nucleotides
- Bulged bases
- 6D90|1|5|U|4882, 6D90|1|5|A|4938, 6D90|1|5|C|4940, 6D90|1|5|A|4943, 6D90|1|5|C|4944, 6D90|1|5|U|4950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D90|1|5|C|4749
6D90|1|5|G|4750
6D90|1|5|G|4751
6D90|1|5|U|4752
6D90|1|5|U|4753
6D90|1|5|G|4754
*
6D90|1|5|C|4879
6D90|1|5|C|4880
6D90|1|5|U|4881
6D90|1|5|U|4882
6D90|1|5|C|4883
6D90|1|5|G|4884
*
6D90|1|5|C|4935
6D90|1|5|G|4936
6D90|1|5|C|4937
6D90|1|5|A|4938
6D90|1|5|C|4939
6D90|1|5|C|4940
6D90|1|5|G|4941
6D90|1|5|C|4942
6D90|1|5|A|4943
6D90|1|5|C|4944
6D90|1|5|G|4945
6D90|1|5|U|4946
6D90|1|5|U|4947
6D90|1|5|C|4948
6D90|1|5|G|4949
6D90|1|5|U|4950
6D90|1|5|G|4951
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- eL6
- Chain M
- eL14
- Chain O
- uL13
- Chain f
- eL33
Coloring options: