J3_6D9J_001

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6D9J_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.2802

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6D9J|1|2|A|40
6D9J|1|2|G|41
*
6D9J|1|2|C|481
6D9J|1|2|G|482
6D9J|1|2|C|483
6D9J|1|2|A|484
6D9J|1|2|A|485
6D9J|1|2|A|486
6D9J|1|2|U|487
*
6D9J|1|2|A|512
6D9J|1|2|G|513
6D9J|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain YY

uS12