J3_6D9J_005

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*UUCCGG*CAAAG

Length

14 nucleotides

Bulged bases

6D9J|1|2|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|C|1094
6D9J|1|2|C|1095
6D9J|1|2|G|1096
*
6D9J|1|2|U|1136
6D9J|1|2|U|1137
6D9J|1|2|C|1138
6D9J|1|2|C|1139
6D9J|1|2|G|1140
6D9J|1|2|G|1141
*
6D9J|1|2|C|1147
6D9J|1|2|A|1148
6D9J|1|2|A|1149
6D9J|1|2|A|1150
6D9J|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BB

uS2

Chain DD

uS5

Chain WW

eS21

Chain XX

uS8

Chain bb

eS26

Chain cc

eS27