J3_6D9J_009

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUUAGUU*AACGAGAC*GCAAUA

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|U|1340
6D9J|1|2|C|1341
6D9J|1|2|U|1342
6D9J|1|2|U|1343
6D9J|1|2|A|1344
6D9J|1|2|G|1345
6D9J|1|2|U|1346
6D9J|1|2|U|1347
*
6D9J|1|2|A|1382
6D9J|1|2|A|1383
6D9J|1|2|C|1384
6D9J|1|2|G|1385
6D9J|1|2|A|1386
6D9J|1|2|G|1387
6D9J|1|2|A|1388
6D9J|1|2|C|1389
*
6D9J|1|2|G|1481
6D9J|1|2|C|1482
6D9J|1|2|A|1483
6D9J|1|2|A|1484
6D9J|1|2|U|1485
6D9J|1|2|A|1486

Current chains

Chain 2

18S rRNA

Nearby chains

Chain DD

uS5

Chain EE

uS3

Chain RR

uS9

Chain SS

eS17

Chain VV

uS10

Chain ee

eS29