J3_6D9J_012

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6D9J|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|C|112
6D9J|1|5|A|113
6D9J|1|5|G|114
6D9J|1|5|C|115
6D9J|1|5|G|116
*
6D9J|1|5|C|155
6D9J|1|5|G|156
6D9J|1|5|U|157
6D9J|1|5|A|158
6D9J|1|5|C|159
6D9J|1|5|G|160
*
6D9J|1|5|C|275
6D9J|1|5|C|276
6D9J|1|5|G|277
6D9J|1|5|G|278

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

eL8

Chain L

eL13

Chain N

eL15

Chain h

eL35

Chain i

eL36