J3_6D9J_015

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAG*CGUAGC*GUCCGAC

Length

17 nucleotides

Bulged bases

6D9J|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|1545
6D9J|1|5|C|1546
6D9J|1|5|A|1547
6D9J|1|5|G|1548
*
6D9J|1|5|C|1580
6D9J|1|5|G|1581
6D9J|1|5|U|1582
6D9J|1|5|A|1583
6D9J|1|5|G|1584
6D9J|1|5|C|1585
*
6D9J|1|5|G|1608
6D9J|1|5|U|1609
6D9J|1|5|C|1610
6D9J|1|5|C|1611
6D9J|1|5|G|1612
6D9J|1|5|A|1613
6D9J|1|5|C|1614

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain R

eL19

Chain g

eL34

Chain j

eL37

Chain p

eL43