J3_6D9J_020

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACGG*UGAC*GGACAGUG

Length

17 nucleotides

Bulged bases

6D9J|1|5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|C|3935
6D9J|1|5|A|3936
6D9J|1|5|C|3937
6D9J|1|5|G|3938
6D9J|1|5|G|3939
*
6D9J|1|5|U|4075
6D9J|1|5|G|4076
6D9J|1|5|A|4077
6D9J|1|5|C|4078
*
6D9J|1|5|G|4168
6D9J|1|5|G|4169
6D9J|1|5|A|4170
6D9J|1|5|C|4171
6D9J|1|5|A|4172
6D9J|1|5|G|4173
6D9J|1|5|U|4174
6D9J|1|5|G|4175

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain G

eL8

Chain N

eL15

Chain i

eL36