J3_6D9J_029

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCCGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

6D9J|1|2|G|1274, 6D9J|1|2|G|1507, 6D9J|1|2|U|1509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|G|1270
6D9J|1|2|C|1271
6D9J|1|2|C|1272
6D9J|1|2|C|1273
6D9J|1|2|G|1274
6D9J|1|2|G|1275
6D9J|1|2|A|1276
6D9J|1|2|C|1277
*
6D9J|1|2|G|1320
6D9J|1|2|G|1321
6D9J|1|2|G|1322
6D9J|1|2|U|1323
6D9J|1|2|G|1324
*
6D9J|1|2|U|1504
6D9J|1|2|U|1505
6D9J|1|2|A|1506
6D9J|1|2|G|1507
6D9J|1|2|A|1508
6D9J|1|2|U|1509
6D9J|1|2|G|1510
6D9J|1|2|U|1511
6D9J|1|2|C|1512

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 9

eEF2

Chain LL

eS10

Chain QQ

uS19

Chain ee

eS29

Chain gg

eS31