J3_6D9J_030

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

6D9J|1|2|A|1454, 6D9J|1|2|U|1477

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|C|1391
6D9J|1|2|U|1392
6D9J|1|2|G|1393
6D9J|1|2|G|1394
6D9J|1|2|C|1395
*
6D9J|1|2|G|1450
6D9J|1|2|G|1451
6D9J|1|2|A|1452
6D9J|1|2|C|1453
6D9J|1|2|A|1454
6D9J|1|2|A|1455
6D9J|1|2|G|1456
*
6D9J|1|2|C|1470
6D9J|1|2|C|1471
6D9J|1|2|C|1472
6D9J|1|2|G|1473
6D9J|1|2|A|1474
6D9J|1|2|G|1475
6D9J|1|2|A|1476
6D9J|1|2|U|1477
6D9J|1|2|U|1478
6D9J|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain EE

uS3

Chain GG

uS7

Chain RR

uS9

Chain SS

eS17

Chain VV

uS10

Chain dd

eS28

Chain ee

eS29

Chain hh

RACK1