J3_6D9J_031

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACUGA*UCGUGAUGG*CGAG

Length

19 nucleotides

Bulged bases

6D9J|1|2|U|1535, 6D9J|1|2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|C|1532
6D9J|1|2|A|1533
6D9J|1|2|C|1534
6D9J|1|2|U|1535
6D9J|1|2|G|1536
6D9J|1|2|A|1537
*
6D9J|1|2|U|1596
6D9J|1|2|C|1597
6D9J|1|2|G|1598
6D9J|1|2|U|1599
6D9J|1|2|G|1600
6D9J|1|2|A|1601
6D9J|1|2|U|1602
6D9J|1|2|G|1603
6D9J|1|2|G|1604
*
6D9J|1|2|C|1635
6D9J|1|2|G|1636
6D9J|1|2|A|1637
6D9J|1|2|G|1638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain GG

uS7

Chain TT

uS13

Chain UU

eS19

Chain aa

eS25