J3_6D9J_034

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUC*GUGCGCC*GGCGAUG

Length

19 nucleotides

Bulged bases

6D9J|1|5|U|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|C|451
6D9J|1|5|A|452
6D9J|1|5|G|453
6D9J|1|5|U|454
6D9J|1|5|C|455
*
6D9J|1|5|G|701
6D9J|1|5|U|702
6D9J|1|5|G|703
6D9J|1|5|C|704
6D9J|1|5|G|705
6D9J|1|5|C|706
6D9J|1|5|C|707
*
6D9J|1|5|G|1290
6D9J|1|5|G|1291
6D9J|1|5|C|1292
6D9J|1|5|G|1293
6D9J|1|5|A|1294
6D9J|1|5|U|1295
6D9J|1|5|G|1296

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain e

eL32

Chain f

eL33