J3_6D9J_035
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCC*GCCGGGC*GGCCACGCGUCCCCCGCG
- Length
- 28 nucleotides
- Bulged bases
- 6D9J|1|5|C|1237, 6D9J|1|5|G|1244, 6D9J|1|5|C|1245, 6D9J|1|5|G|1246, 6D9J|1|5|U|1247, 6D9J|1|5|C|1248, 6D9J|1|5|C|1252, 6D9J|1|5|G|1271, 6D9J|1|5|C|1272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|5|U|982
6D9J|1|5|C|983
6D9J|1|5|C|984
*
6D9J|1|5|G|1070
6D9J|1|5|C|1071
6D9J|1|5|C|1072
6D9J|1|5|G|1073
6D9J|1|5|G|1074
6D9J|1|5|G|1075
6D9J|1|5|C|1076
*
6D9J|1|5|G|1234
6D9J|1|5|G|1235
6D9J|1|5|C|1236
6D9J|1|5|C|1237
6D9J|1|5|A|1238
6D9J|1|5|C|1239
6D9J|1|5|G|1244
6D9J|1|5|C|1245
6D9J|1|5|G|1246
6D9J|1|5|U|1247
6D9J|1|5|C|1248
6D9J|1|5|C|1249
6D9J|1|5|C|1250
6D9J|1|5|C|1251
6D9J|1|5|C|1252
6D9J|1|5|G|1271
6D9J|1|5|C|1272
6D9J|1|5|G|1273
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain E
- eL6
- Chain F
- uL30
- Chain b
- eL29
Coloring options: