J3_6D9J_041

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCC*GGCCUCACGAUCC*GGUGUC

Length

23 nucleotides

Bulged bases

6D9J|1|5|U|4374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|4228
6D9J|1|5|U|4229
6D9J|1|5|C|4230
6D9J|1|5|C|4231
*
6D9J|1|5|G|4330
6D9J|1|5|G|4331
6D9J|1|5|C|4332
6D9J|1|5|C|4333
6D9J|1|5|U|4334
6D9J|1|5|C|4335
6D9J|1|5|A|4336
6D9J|1|5|C|4337
6D9J|1|5|G|4338
6D9J|1|5|A|4339
6D9J|1|5|U|4340
6D9J|1|5|C|4341
6D9J|1|5|C|4342
*
6D9J|1|5|G|4370
6D9J|1|5|G|4371
6D9J|1|5|U|4372
6D9J|1|5|G|4373
6D9J|1|5|U|4374
6D9J|1|5|C|4375

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

eL18

Chain T

eL21

Chain a

uL15

Chain o

eL42