J3_6D9J_042

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCAGG*CCGUGGAG*CAAAAG

Length

20 nucleotides

Bulged bases

6D9J|1|5|A|4280, 6D9J|1|5|A|4282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|C|4241
6D9J|1|5|U|4242
6D9J|1|5|C|4243
6D9J|1|5|A|4244
6D9J|1|5|G|4245
6D9J|1|5|G|4246
*
6D9J|1|5|C|4262
6D9J|1|5|C|4263
6D9J|1|5|G|4264
6D9J|1|5|U|4265
6D9J|1|5|G|4266
6D9J|1|5|G|4267
6D9J|1|5|A|4268
6D9J|1|5|G|4269
*
6D9J|1|5|C|4278
6D9J|1|5|A|4279
6D9J|1|5|A|4280
6D9J|1|5|A|4281
6D9J|1|5|A|4282
6D9J|1|5|G|4283

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

uL18

Chain J

uL11

Chain T

eL21