J3_6D9J_043

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

6D9J|1|5|U|4882, 6D9J|1|5|A|4938, 6D9J|1|5|C|4940, 6D9J|1|5|A|4943, 6D9J|1|5|C|4944, 6D9J|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|C|4749
6D9J|1|5|G|4750
6D9J|1|5|G|4751
6D9J|1|5|U|4752
6D9J|1|5|U|4753
6D9J|1|5|G|4754
*
6D9J|1|5|C|4879
6D9J|1|5|C|4880
6D9J|1|5|U|4881
6D9J|1|5|U|4882
6D9J|1|5|C|4883
*
6D9J|1|5|G|4936
6D9J|1|5|C|4937
6D9J|1|5|A|4938
6D9J|1|5|C|4939
6D9J|1|5|C|4940
6D9J|1|5|G|4941
6D9J|1|5|C|4942
6D9J|1|5|A|4943
6D9J|1|5|C|4944
6D9J|1|5|G|4945
6D9J|1|5|U|4946
6D9J|1|5|U|4947
6D9J|1|5|C|4948
6D9J|1|5|G|4949
6D9J|1|5|U|4950
6D9J|1|5|G|4951

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain M

eL14

Chain O

uL13

Chain f

eL33