J3_6D9J_047

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAU*GCUAAGG*CACC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|1968
6D9J|1|5|G|1969
6D9J|1|5|A|1970
6D9J|1|5|U|1971
*
6D9J|1|5|G|1995
6D9J|1|5|C|1996
6D9J|1|5|U|1997
6D9J|1|5|A|1998
6D9J|1|5|A|1999
6D9J|1|5|G|2000
6D9J|1|5|G|2001
*
6D9J|1|5|C|2016
6D9J|1|5|A|2017
6D9J|1|5|C|2018
6D9J|1|5|C|2019

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

uL10

Chain t

uL11