J3_6DDD_005

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DDD_005 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1346

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6DDD|1|1|C|743
6DDD|1|1|A|744
6DDD|1|1|G|745
*
6DDD|1|1|C|777
6DDD|1|1|G|778
6DDD|1|1|A|779
6DDD|1|1|A|780
6DDD|1|1|C|781
*
6DDD|1|1|G|805
6DDD|1|1|A|806
6DDD|1|1|U|807
6DDD|1|1|G|808

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2