J3_6DDD_007
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*CGCAAAC*GUAG
- Length
- 16 nucleotides
- Bulged bases
- 6DDD|1|1|A|1653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDD_007 not in the Motif Atlas
- Homologous match to J3_4WF9_005
- Geometric discrepancy: 0.0949
- The information below is about J3_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68164.1
- Basepair signature
- cWW-tSH-F-F-tHW-F-F-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6DDD|1|1|C|1342
6DDD|1|1|U|1343
6DDD|1|1|A|1344
6DDD|1|1|A|1345
6DDD|1|1|G|1346
*
6DDD|1|1|C|1649
6DDD|1|1|G|1650
6DDD|1|1|C|1651
6DDD|1|1|A|1652
6DDD|1|1|A|1653
6DDD|1|1|A|1654
6DDD|1|1|C|1655
*
6DDD|1|1|G|1664
6DDD|1|1|U|1665
6DDD|1|1|A|1666
6DDD|1|1|G|1667
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain P
- 50S ribosomal protein L34
Coloring options: