J3_6DDD_008

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

6DDD|1|1|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DDD_008 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1337

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6DDD|1|1|U|1381
6DDD|1|1|C|1382
6DDD|1|1|G|1383
6DDD|1|1|G|1384
6DDD|1|1|G|1385
6DDD|1|1|U|1386
6DDD|1|1|C|1387
*
6DDD|1|1|G|1418
6DDD|1|1|A|1419
6DDD|1|1|U|1420
6DDD|1|1|A|1421
6DDD|1|1|A|1422
*
6DDD|1|1|U|1439
6DDD|1|1|A|1440

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L23