J3_6DDD_010
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUC*GAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDD_010 not in the Motif Atlas
- Homologous match to J3_4WF9_008
- Geometric discrepancy: 0.1237
- The information below is about J3_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6DDD|1|1|C|2322
6DDD|1|1|U|2323
6DDD|1|1|C|2324
*
6DDD|1|1|G|2348
6DDD|1|1|A|2349
6DDD|1|1|G|2350
*
6DDD|1|1|C|2359
6DDD|1|1|A|2360
6DDD|1|1|U|2361
6DDD|1|1|A|2362
6DDD|1|1|A|2363
6DDD|1|1|G|2364
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain I
- 50S ribosomal protein L27
- Chain a
- 50S ribosomal protein L18
Coloring options: