J3_6DDD_011
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6DDD|1|1|A|2545, 6DDD|1|1|U|2546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDD_011 not in the Motif Atlas
- Homologous match to J3_4WF9_009
- Geometric discrepancy: 0.0946
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6DDD|1|1|C|2544
6DDD|1|1|A|2545
6DDD|1|1|U|2546
6DDD|1|1|C|2547
*
6DDD|1|1|G|2572
6DDD|1|1|U|2573
6DDD|1|1|U|2574
*
6DDD|1|1|A|2588
6DDD|1|1|U|2589
6DDD|1|1|U|2590
6DDD|1|1|A|2591
6DDD|1|1|A|2592
6DDD|1|1|A|2593
6DDD|1|1|G|2594
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain W
- 50S ribosomal protein L14
Coloring options: