J3_6DDD_012
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CA*UAUAAG*CGAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDD_012 not in the Motif Atlas
- Homologous match to J3_7RQB_013
- Geometric discrepancy: 0.3603
- The information below is about J3_7RQB_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24416.1
- Basepair signature
- cWW-F-F-tWH-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6DDD|1|1|C|2816
6DDD|1|1|A|2817
*
6DDD|1|1|U|2826
6DDD|1|1|A|2827
6DDD|1|1|U|2828
6DDD|1|1|A|2829
6DDD|1|1|A|2830
6DDD|1|1|G|2831
*
6DDD|1|1|C|2909
6DDD|1|1|G|2910
6DDD|1|1|A|2911
6DDD|1|1|A|2912
6DDD|1|1|G|2913
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
Coloring options: