J3_6DDD_018

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DDD_018 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0895

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6DDD|1|1|G|1468
6DDD|1|1|G|1469
6DDD|1|1|G|1470
6DDD|1|1|A|1471
6DDD|1|1|C|1472
6DDD|1|1|G|1473
*
6DDD|1|1|C|1611
6DDD|1|1|C|1612
*
6DDD|1|1|G|1615
6DDD|1|1|A|1616
6DDD|1|1|A|1617
6DDD|1|1|A|1618
6DDD|1|1|A|1619
6DDD|1|1|G|1620
6DDD|1|1|C|1621

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2