J3_6DDG_010
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6DDG|1|1|A|2545, 6DDG|1|1|U|2546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDG_010 not in the Motif Atlas
- Homologous match to J3_7RQB_012
- Geometric discrepancy: 0.1066
- The information below is about J3_7RQB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.3
- Basepair signature
- cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6DDG|1|1|C|2544
6DDG|1|1|A|2545
6DDG|1|1|U|2546
6DDG|1|1|C|2547
*
6DDG|1|1|G|2572
6DDG|1|1|U|2573
6DDG|1|1|U|2574
*
6DDG|1|1|A|2588
6DDG|1|1|U|2589
6DDG|1|1|U|2590
6DDG|1|1|A|2591
6DDG|1|1|A|2592
6DDG|1|1|A|2593
6DDG|1|1|G|2594
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain W
- 50S ribosomal protein L14
Coloring options: