J3_6DDG_015
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAAG*CGCAAAC*GUA
- Length
- 14 nucleotides
- Bulged bases
- 6DDG|1|1|A|1653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DDG_015 not in the Motif Atlas
- Homologous match to J3_9DFE_011
- Geometric discrepancy: 0.157
- The information below is about J3_9DFE_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6DDG|1|1|U|1343
6DDG|1|1|A|1344
6DDG|1|1|A|1345
6DDG|1|1|G|1346
*
6DDG|1|1|C|1649
6DDG|1|1|G|1650
6DDG|1|1|C|1651
6DDG|1|1|A|1652
6DDG|1|1|A|1653
6DDG|1|1|A|1654
6DDG|1|1|C|1655
*
6DDG|1|1|G|1664
6DDG|1|1|U|1665
6DDG|1|1|A|1666
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain P
- 50S ribosomal protein L34
Coloring options: