J3_6DNC_026
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 6DNC|1|C|G|13, 6DNC|1|C|U|14, 6DNC|1|C|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DNC_026 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.2766
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6DNC|1|C|G|10
6DNC|1|C|C|11
6DNC|1|C|C|12
6DNC|1|C|G|13
6DNC|1|C|U|14
6DNC|1|C|A|15
6DNC|1|C|G|16
*
6DNC|1|C|C|68
6DNC|1|C|G|69
6DNC|1|C|C|70
*
6DNC|1|C|G|106
6DNC|1|C|G|107
6DNC|1|C|A|108
6DNC|1|C|A|109
6DNC|1|C|C|110
Current chains
- Chain C
- 5S ribosomal RNA
Nearby chains
- Chain AA
- 50S ribosomal protein L27
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 50S ribosomal protein L18
- Chain Z
- 50S ribosomal protein L25
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