J3_6DNC_034
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 6DNC|1|B|U|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DNC_034 not in the Motif Atlas
- Homologous match to J3_5J7L_068
- Geometric discrepancy: 0.0884
- The information below is about J3_5J7L_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6DNC|1|B|G|297
6DNC|1|B|G|298
6DNC|1|B|A|299
6DNC|1|B|A|300
6DNC|1|B|G|301
*
6DNC|1|B|C|316
6DNC|1|B|G|317
6DNC|1|B|C|318
6DNC|1|B|G|319
6DNC|1|B|A|320
6DNC|1|B|U|321
6DNC|1|B|A|322
6DNC|1|B|C|323
6DNC|1|B|A|324
6DNC|1|B|G|325
*
6DNC|1|B|C|337
6DNC|1|B|G|338
6DNC|1|B|U|339
6DNC|1|B|A|340
6DNC|1|B|C|341
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L4
- Chain Y
- 50S ribosomal protein L24
Coloring options: