J3_6DZI_001

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZI_001 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.1504

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6DZI|1|A|G|27
6DZI|1|A|C|28
*
6DZI|1|A|G|562
6DZI|1|A|U|563
6DZI|1|A|G|564
6DZI|1|A|A|565
6DZI|1|A|A|566
6DZI|1|A|A|567
6DZI|1|A|A|568
6DZI|1|A|G|569
*
6DZI|1|A|C|596
6DZI|1|A|C|597

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain R

50S ribosomal protein L20

Chain T

50S ribosomal protein L22

Chain V

50S ribosomal protein L24