J3_6DZI_002

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

6DZI|1|A|A|71

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZI_002 not in the Motif Atlas

Homologous match to J3_7RQB_002

Geometric discrepancy: 0.1172

The information below is about J3_7RQB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84625.2

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6DZI|1|A|A|53
6DZI|1|A|C|54
*
6DZI|1|A|G|67
6DZI|1|A|A|68
6DZI|1|A|U|69
6DZI|1|A|A|70
6DZI|1|A|A|71
6DZI|1|A|G|72
6DZI|1|A|C|73
*
6DZI|1|A|G|107
6DZI|1|A|A|108
6DZI|1|A|U|109
6DZI|1|A|G|110
6DZI|1|A|U|111

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain U

50S ribosomal protein L23

Chain Z

50S ribosomal protein L29

Chain d

50S ribosomal protein L34