J3_6DZI_013

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6DZI|1|A|A|2742, 6DZI|1|A|U|2743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZI_013 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1265

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6DZI|1|A|C|2741
6DZI|1|A|A|2742
6DZI|1|A|U|2743
6DZI|1|A|C|2744
*
6DZI|1|A|G|2769
6DZI|1|A|U|2770
6DZI|1|A|U|2771
*
6DZI|1|A|A|2785
6DZI|1|A|U|2786
6DZI|1|A|U|2787
6DZI|1|A|A|2788
6DZI|1|A|A|2789
6DZI|1|A|A|2790
6DZI|1|A|G|2791

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14