J3_6DZI_018
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- UG*CACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 6DZI|1|h|U|703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZI_018 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.2324
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6DZI|1|h|U|652
6DZI|1|h|G|653
*
6DZI|1|h|C|697
6DZI|1|h|A|698
6DZI|1|h|C|699
6DZI|1|h|C|700
6DZI|1|h|G|701
6DZI|1|h|G|702
6DZI|1|h|U|703
6DZI|1|h|G|704
6DZI|1|h|G|705
*
6DZI|1|h|C|712
6DZI|1|h|G|713
6DZI|1|h|G|714
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain n
- 30S ribosomal protein S6
- Chain r
- 30S ribosomal protein S18 1
- Chain t
- 30S ribosomal protein S11
- Chain x
- 30S ribosomal protein S15
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