J3_6DZI_021
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 6DZI|1|h|A|957, 6DZI|1|h|G|958, 6DZI|1|h|A|960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZI_021 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1813
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6DZI|1|h|A|937
6DZI|1|h|U|938
6DZI|1|h|U|939
6DZI|1|h|A|940
6DZI|1|h|A|941
6DZI|1|h|U|942
6DZI|1|h|U|943
6DZI|1|h|C|944
*
6DZI|1|h|G|955
6DZI|1|h|A|956
6DZI|1|h|A|957
6DZI|1|h|G|958
6DZI|1|h|A|959
6DZI|1|h|A|960
6DZI|1|h|C|961
6DZI|1|h|C|962
6DZI|1|h|U|963
6DZI|1|h|U|964
6DZI|1|h|A|965
6DZI|1|h|C|966
*
6DZI|1|h|G|1202
6DZI|1|h|G|1203
6DZI|1|h|C|1204
6DZI|1|h|U|1205
6DZI|1|h|U|1206
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain 6
- 30S ribosomal protein S19
- Chain 9
- 30S ribosomal protein S14
- Chain Y
- Ribosome hibernation promoting factor
- Chain s
- 30S ribosomal protein S10
- Chain v
- 30S ribosomal protein S13
Coloring options: