J3_6DZI_023
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZI_023 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.2252
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6DZI|1|h|C|1043
6DZI|1|h|G|1044
6DZI|1|h|U|1045
6DZI|1|h|C|1046
6DZI|1|h|A|1047
6DZI|1|h|G|1048
*
6DZI|1|h|C|1087
6DZI|1|h|G|1088
6DZI|1|h|C|1089
6DZI|1|h|A|1090
6DZI|1|h|A|1091
6DZI|1|h|C|1092
6DZI|1|h|C|1093
*
6DZI|1|h|G|1168
6DZI|1|h|A|1169
6DZI|1|h|U|1170
6DZI|1|h|G|1171
6DZI|1|h|A|1172
6DZI|1|h|C|1173
6DZI|1|h|G|1174
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain 4
- 30S ribosomal protein S9
- Chain 8
- 30S ribosomal protein S2
- Chain 9
- 30S ribosomal protein S14
- Chain k
- 30S ribosomal protein S3
- Chain m
- 30S ribosomal protein S5
- Chain p
- 30S ribosomal protein S7
- Chain s
- 30S ribosomal protein S10
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