J3_6DZI_041

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

6DZI|1|h|U|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZI_041 not in the Motif Atlas

Geometric match to J3_4LFB_005

Geometric discrepancy: 0.2636

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6DZI|1|h|U|972
6DZI|1|h|U|973
6DZI|1|h|U|974
6DZI|1|h|G|975
*
6DZI|1|h|C|1025
6DZI|1|h|A|1026
6DZI|1|h|G|1027
*
6DZI|1|h|C|1191
6DZI|1|h|U|1192
6DZI|1|h|U|1193
6DZI|1|h|A|1194
6DZI|1|h|U|1195
6DZI|1|h|G|1196

Current chains

Chain h

16S rRNA

Nearby chains

Chain 9

30S ribosomal protein S14