J3_6DZK_007
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUG*CAG*CUUAUG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZK_007 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.2334
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84394.1
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6DZK|1|A|U|972
6DZK|1|A|U|973
6DZK|1|A|U|974
6DZK|1|A|G|975
*
6DZK|1|A|C|1025
6DZK|1|A|A|1026
6DZK|1|A|G|1027
*
6DZK|1|A|C|1191
6DZK|1|A|U|1192
6DZK|1|A|U|1193
6DZK|1|A|A|1194
6DZK|1|A|U|1195
6DZK|1|A|G|1196
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S14
Coloring options: