J3_6DZK_009
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZK_009 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1805
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6DZK|1|A|C|1043
6DZK|1|A|G|1044
6DZK|1|A|U|1045
6DZK|1|A|C|1046
6DZK|1|A|A|1047
6DZK|1|A|G|1048
*
6DZK|1|A|C|1087
6DZK|1|A|G|1088
6DZK|1|A|C|1089
6DZK|1|A|A|1090
6DZK|1|A|A|1091
6DZK|1|A|C|1092
6DZK|1|A|C|1093
*
6DZK|1|A|G|1168
6DZK|1|A|A|1169
6DZK|1|A|U|1170
6DZK|1|A|G|1171
6DZK|1|A|A|1172
6DZK|1|A|C|1173
6DZK|1|A|G|1174
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain E
- 30S ribosomal protein S5
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
- Chain V
- 30S ribosomal protein S2
Coloring options: