J3_6DZK_020
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- 6DZK|1|A|A|1081
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZK_020 not in the Motif Atlas
- Homologous match to J3_5J7L_009
- Geometric discrepancy: 0.3869
- The information below is about J3_5J7L_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6DZK|1|A|U|1053
6DZK|1|A|G|1054
*
6DZK|1|A|U|1063
6DZK|1|A|G|1064
6DZK|1|A|U|1065
6DZK|1|A|U|1066
6DZK|1|A|G|1067
*
6DZK|1|A|C|1078
6DZK|1|A|G|1079
6DZK|1|A|C|1080
6DZK|1|A|A|1081
6DZK|1|A|A|1082
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S5
- Chain V
- 30S ribosomal protein S2
Coloring options: