J3_6DZP_008

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

6DZP|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZP_008 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1399

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6DZP|1|A|U|1459
6DZP|1|A|C|1460
6DZP|1|A|G|1461
6DZP|1|A|G|1462
6DZP|1|A|G|1463
6DZP|1|A|A|1464
6DZP|1|A|C|1465
*
6DZP|1|A|G|1496
6DZP|1|A|A|1497
6DZP|1|A|C|1498
6DZP|1|A|A|1499
6DZP|1|A|A|1500
*
6DZP|1|A|U|1517
6DZP|1|A|A|1518

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34