J3_6DZP_011

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZP_011 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.1405

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6DZP|1|A|U|2314
6DZP|1|A|U|2315
6DZP|1|A|G|2316
*
6DZP|1|A|C|2419
6DZP|1|A|U|2420
6DZP|1|A|A|2421
6DZP|1|A|A|2422
6DZP|1|A|C|2423
*
6DZP|1|A|G|2447
6DZP|1|A|G|2448
6DZP|1|A|A|2449
6DZP|1|A|C|2450
6DZP|1|A|A|2451
6DZP|1|A|G|2452

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain y

50S ribosomal protein L28