J3_6DZP_017
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 6DZP|1|A|U|31, 6DZP|1|A|U|536, 6DZP|1|A|U|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6DZP_017 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.2346
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6DZP|1|A|C|29
6DZP|1|A|U|30
6DZP|1|A|U|31
6DZP|1|A|G|32
*
6DZP|1|A|C|533
6DZP|1|A|G|534
6DZP|1|A|A|535
6DZP|1|A|U|536
6DZP|1|A|A|537
6DZP|1|A|G|538
6DZP|1|A|C|539
6DZP|1|A|G|540
6DZP|1|A|G|541
6DZP|1|A|A|542
6DZP|1|A|U|543
6DZP|1|A|U|544
6DZP|1|A|A|545
6DZP|1|A|G|546
6DZP|1|A|U|547
6DZP|1|A|A|548
6DZP|1|A|C|549
*
6DZP|1|A|G|556
6DZP|1|A|G|557
6DZP|1|A|A|558
6DZP|1|A|A|559
6DZP|1|A|U|560
6DZP|1|A|G|561
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain R
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L23
- Chain d
- 50S ribosomal protein L34
Coloring options: